I have created a simple batch file that you can run a Quick-VS match on M.U.G.E.N. Place the batch on your M.U.G.E.N directory (the base, where mugen.exe is). Double-click the batch file and follow directions.
UPDATE: You can now save batch files of your configuration! Double-click your newly created batch file to quickly run M.U.G.E.N with your settings. http://www.mediafire.com/download/t4h7nupf6nkxi67/Quick-VS.bat
PLEASE NOTE: If you are going to use it for WinMugen (the beta 2002.4.14 and the plus versions), here is the alternate download link: http://www.mediafire.com/view/uxnyvx236zwr8d1/Quick-VS_forWinMugen.bat
UPDATE: Improved on the AI setting to remove the extra space and now the choices for savebatch and overwrite are cleared upon the reset script.